PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010542422.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 517aa    MW: 56071.3 Da    PI: 8.4447
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010542422.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05105127123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k F r  nL+ H r H
  XP_010542422.1 105 FICEICSKGFQRDQNLQLHRRGH 127
                     89*******************88 PP

2zf-C2H211.80.00074182204123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H + +
  XP_010542422.1 182 WKCDKCSKRYAVQSDWKAHSKIC 204
                     58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.1E-5104127IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.73E-8104127No hitNo description
SMARTSM003550.047105127IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.783105127IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SMARTSM0035587147177IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4170203IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.73E-8177202No hitNo description
SMARTSM00355140182202IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MMMMNKDMLF HHQQQQQQQQ VIAEENMSNL TSASGDQASV SSGNRSEASG SNFVINPQQQ  60
QYFVLQPEAQ TSQPPKKKRN QPGNPDPDAE VIALSPGTLQ ARNRFICEIC SKGFQRDQNL  120
QLHRRGHNLP WKLKQRSKTE AIRKKVYVCP EPSCVHHDPS RALGDLTGIK KHFSRKHGEK  180
RWKCDKCSKR YAVQSDWKAH SKICGTKEYR CDCGTLFSRR DSFITHRAFC DALAEESVRS  240
IQTQQPNTPL IQSPRHQTPP NNASSSSSSQ NLISLHIQSL GSYGARNNGS SSSSTCSNNN  300
NPHAFPMKKE QQSDVNQIMI PHWLSPSNPN PNPSGCGFFP FGSATATAAC FHHPSPPSPA  360
MSATALLQKA AQMGATNSAP SPTDVVRSSH NLTTTMASMM TSSATPPPGF GFAGGNSDNP  420
SMFQDYNSMD SAAGFGRGEA FEESFGGFLG TSAAAGVAVP VAGEKNGGGG VGEGLTRDFL  480
GLRPLYHSDI LSFAGLGDCL DGNASEEHSH SQNLWQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133144KQRSKTEAIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542422.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X1
RefseqXP_010542423.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X2
SwissprotQ8H1F51e-158IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLV4LDU40.0V4LDU4_EUTSA; Uncharacterized protein
STRINGBra021510.1-P1e-171(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-129indeterminate(ID)-domain 7